http://www.biochemfusion.com/ Latest news, updates, and releases from Biochemfusion. Wed, 5 Apr 2023 13:00 +0200 en-us http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.3 2023-03 released. Residue extensions are now a thing. Wed, 5 Apr 2023 13:00 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.2 2022-09 released. This is a patch that fixes a bug in the list() function. Wed, 28 Sep 2022 14:00 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.2 released. Proteax for Spreadsheets and Proteax Core are now available in version 3.2. Fri, 26 Aug 2022 10:15 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.1 released. Proteax for Spreadsheets and Proteax Core are now available in version 3.1. Sun, 24 Oct 2021 11:32 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.0 released. Proteax for Spreadsheets and Proteax Core are now available in version 3.0. Tue, 29 Dec 2020 20:30 +0100 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.0 final beta available. Fixes an issue with Live Cell Graphics on newer 64-bit Excel versions and an Access Violation when using multiple crosslinks in a sequence. Sun, 01 Nov 2020 23:45 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.0 beta 2 available. Terminally linked crosslinks are now supported. Tue, 04 Aug 2020 22:00 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.0 beta 1 available. All components now operational, integrated with Proteax 3.0. Sun, 10 May 2020 12:00 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax 3.0 preview available. Support for arbitrarily crosslinked peptides. Fri, 31 Jan 2020 15:00 +0100 http://www.biochemfusion.com/downloads/#ProteaxDesktop Releases Proteax Desktop 2.4 official release. Support for isotopes, repeating groups and more... Thu, 02 Mar 2017 21:00 +0100 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases A service release for Proteax for Spreadsheets is out, fixing an issue with printing large Excel sheets. Includes some major Live Cell Graphics performance improvements too. Tue, 13 Dec 2016 15:00 +0100 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax for Spreadsheets 2.4 is out, with image-based Live Cell Graphics that works in Excel 2007, 2010, 2013, and 2016. Tue, 29 Nov 2016 21:00 +0100 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax for Spreadsheets is out, with support for thioether bridges, anti-aliased graphics, implicit hydrogen display, and more. Tue, 24 Feb 2015 21:00 +0100 http://www.biochemfusion.com/doc/#Specifications Releases The Protein Line Notation specification is now at version 1.4, adding support for the formation of thioether bridges. Fri, 20 Feb 2015 16:00 +0100 http://www.biochemfusion.com/downloads/#OracleUtilities Releases A new PYPL Oracle cartridge is now out. This version supports Windows servers and adds safe encoding of string data passed to Python. Sun, 2 Nov 2014 15:00 +0100 http://www.biochemfusion.com/downloads/#ProteaxDesktop Releases Proteax Desktop 2.2 is now out. Improved structure->sequence mapping; new ultra-fast protein key generation to duplicate check large protein structures; and more... Mon, 4 Aug 2014 16:00 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax for Spreadsheets can now be used in OpenOffice/LibreOffice Calc again. The extension works on both Windows and Linux with both the 3.x and 4.x line of OpenOffice and LibreOffice. Mon, 4 Aug 2014 16:00 +0200 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax for Spreadsheets 2.2 is now out. Supports Office 2013, fixes a number of Excel interaction issues, easier corporate deployment. Mon, 21 Jul 2014 10:00 +0200 http://www.biochemfusion.com/downloads/#ProteaxCartridge Updates The Proteax Cartridge for Oracle now runs on Solaris SPARC. You can request an installer for the 2.x series of the cartridge (Windows, Linux, Solaris) by contacting support@biochemfusion.com. Mon, 21 Jul 2014 10:00 +0200 http://www.biochemfusion.com/doc/#Presentation-no-10 News Biochemfusion and StructurePendium presented the poster "A computationally efficient structure key for large proteins" at ICCS 2014 in The Netherlands. A mechanism is proposed that could make it possible to rapidly calculate unique structure keys for very large protein structures. Wed, 11 Jun 2014 10:00 +0100 http://www.biochemfusion.com/downloads/#OracleUtilities Releases The Open Source PYPL Oracle cartridge has been updated. Fixes an issue with using modules and nested functions. Thu, 31 Mar 2014 21:30 +0100 http://www.biochemfusion.com/downloads/#OracleUtilities Releases With the Open Source PYPL Oracle cartridge you can call Python scripts directly from Oracle PL/SQL. One example of using this is to create functions that call directly into the RDKit cheminformatics toolkit to calculate chemical descriptors, perform in-silico chemical reactions, do structural diversity analysis, and much more. Thu, 27 Feb 2014 22:30 +0100 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax for Spreadsheets 2.1 is now out. Sequence and structure display directly in Excel cells - with printing support. Improved molfile import (now supports both V2000 and V3000 format). Direct import and export in self-contained formats, and more... Mon, 27 Jan 2014 11:30 +0100 http://www.biochemfusion.com/doc/#Specifications Releases The DerNot (Derivatives Notation) specification is now at version 1.1. It now allows inline modification structures to be embedded so proteins expressed in PLN 1.3 can be compared reliably. Sun, 19 Jan 2014 20:00 +0100 http://www.inchi-trust.org/about-the-inchi-trust/ News Biochemfusion is showing its support for the InChI Trust. The InChI software is used internally by Proteax to generate unique structure keys, facilitating comparison of modified protein sequences, ensuring unique entries in the modification database, etc.. Thu, 7 November 2013 12:00 +0100 http://www.biochemfusion.com/downloads/proteax_knime_nodes/examples.html Releases Example workflows showing how the Proteax KNIME nodes can be used are now available for download. Learn how to produce protein SAR tables, convert chemical structures into sequences and more. Thu, 6 June 2013 07:00 +0100 http://www.biochemfusion.com/downloads/#ProteaxForSpreadsheets Releases Proteax for Spreadsheets 2.0 is now out. Direct editing of sequences in external structure editors or the built-in Proteax PLN editor, import of SD files, and more... Tue, 21 May 2013 17:45 +0100 http://www.biochemfusion.com/downloads/#ProteaxKnimeNodes Releases The first production release of the Proteax KNIME nodes is now available. The Proteax KNIME nodes make it easy to use Proteax functions within KNIME workflows and they are supported on both Windows and Linux. Sat, 11 May 2013 12:20 +0100 http://www.biochemfusion.com/downloads/#ProteaxDesktop Releases The production release of Proteax Desktop 2.0 is now here. Full support for inline modifications and self-contained PLN. Wed, 8 May 2013 20:45 +0100 http://www.biochemfusion.com/doc/#Specifications Releases The Protein Line Notation specification is now at version 1.3. It now includes definitions for how to embed inline modification structures in PLN to enable self-contained representations. Wed, 8 May 2013 08:45 +0100 http://www.biochemfusion.com/doc/ Releases Pre-releases of Proteax 2.0 are now available for download. Proteax Desktop 2.0 and Proteax for Spreadsheets 2.0 can now be tested. Proteax 2.0 includes structure-to-sequence capability for full two-way conversion between sequences and chemical structures. Thu, 14 Mar 2013 16:00 +0100 http://www.biochemfusion.com/doc/ Releases A short presentation on how to get the cheminformatics toolkit RDKit up and running on the tiny Raspberry Pi PC. Tue, 23 Oct 2012 12:00 +0100 http://www.biochemfusion.com/downloads/index.html#ProteaxCartridge Releases Proteax Cartridge 1.4 released. You can now use all the features of Proteax 1.4 within Oracle - sequence fingerprinting, PLN enhancements, and more. Wed, 29 Feb 2012 13:00 +0100 http://www.biochemfusion.com/downloads/index.html#ProteaxForSpreadsheets Releases Proteax for Spreadsheets 1.4 released. You can now use all the features of Proteax 1.4 from Excel - sequence fingerprinting, PLN enhancements, and more. Sat, 31 Dec 2011 16:00 +0100 http://www.biochemfusion.com/doc/ Updates Protein Line Notation (PLN) specification V1.2 released. The specification is now in-sync with the implementation in Proteax Desktop 1.4. Wed, 07 Dec 2011 13:30 +0100 http://www.biochemfusion.com/downloads/index.html#ProteaxDesktop Releases Proteax Desktop 1.4 adds sequence fingerprinting, improved protein normalization, support for 'O' and 'X' residues, and PLN notation enhancements. Wed, 30 Nov 2011 17:00 +0100 http://biochemfusion.com/doc/ News Biochemfusion's talk on "readable protein SAR tables" at MipTec 2011's Informatics User Group Meeting is now online. A poster which was also presented has been reformatted to a business white paper that you may also download. Wed, 28 Sep 2011 11:00 +0200 http://proteax.dk/demo_db/ News The demonstration database now has a web-based front-end. Register and search modified proteins and generate protein SAR tables with a few clicks. Wed, 28 Sep 2011 11:00 +0200 http://www.bitlifesciences.com/icm2011/fullprogram.asp News Jan Holst Jensen will give a talk at MediChem-2011 in Beijing, August 10th. The talk will show how parallel registration of sequence and structure enables consistent registration and retrieval of biopharmaceuticals. Biochemfusion's PLN notation will also be shown to be a valuable tool in providing lightning-fast identity checks. Mon, 11 Jul 2011 12:00 +0100 http://www.proteax.dk/proteax_live/ Updates The new browser-based protein editor can now be tested at the Proteax demo site. 100% JavaScript-based, so no plugins needed at all. Sun, 26 Jun 2011 23:00 +0100 http://www.biochemfusion.com/downloads/index.html#ProteaxDesktop Releases This latest Proteax Desktop update makes it very simple to deploy and use Java-based Proteax clients. Tue, 15 Mar 2011 15:00 +0100 http://www.knime.org/about/events/ugm-workshop-2011 News Biochemfusion will be at the 4th KNIME User Group Meeting, Zürich, March 2-4 2011. Plans are to attend the High Content Analytics SIG meeting too on Friday March 4th. Fri, 21 Jan 2011 11:00 +0100 http://www.biochemfusion.com/downloads/ Releases Proteax Desktop can now be used from Java applications. The latest Proteax Desktop download contains a Java wrapper that gives you easy access to all Proteax 1.3 functionality from within Java. Fri, 14 Jan 2011 23:00 +0100 http://www.biochemfusion.com/downloads/ Releases The Proteax rendering tools display molecules and sequences in applications and on web pages. Open Source and available for C#, Java, JavaScript, Flash, and Pascal. Mon, 27 Dec 2010 17:00 +0100 http://www.biochemfusion.com/downloads/ Releases Proteax for Spreadsheets 1.3 is now available for download. Enjoy enhanced layout and rendering of chemical structures and point-and-click protein comparison. Wed, 24 Nov 2010 19:00 +0100 http://www.biochemfusion.com/doc/ Releases Proteax uses a special graphics instruction set that is very compact and easily inlined in web pages. The newly released format description documents the instruction set and how it should be interpreted. Fri, 12 Nov 2010 13:00 +0100 http://accelrys.com/events/ugms/2010/europe/ News Biochemfusion will be at the Accelrys 2010 EUGM, Barcelona, Spain. Mon, 25 Oct 2010 09:00 +0100 http://www.biochemfusion.com/webshop/ News Biochemfusion has opened its webshop so you can buy Proteax licenses online with all major credit cards. Get started for as little as € 350 ! Sat, 21 Aug 2010 16:00 +0100 http://www.biochemfusion.com/downloads/ Updates Proteax for Spreadsheets can now interface directly to ChemAxon's JChem for Excel, giving you one-click protein-to-structure conversion and inline structure display. Plus a number of minor improvements too. Sun, 16 May 2010 10:00 +0100 http://www.bioconferencelive.com/ News Visit Biochemfusion at BioConference Live June 2-3 2010, The Online-Only Conference for the Life Sciences Community. Registration and attendance is free. Fri, 07 May 2010 15:00 +0100 http://www.chemaxon.com/UGM/07/index.html News Meet Biochemfusion at the ChemAxon European UGM in Budapest, Hungary, and learn how to seamlessly move from sequence to chemistry space without leaving Excel. Proteax for Spreadsheets will in its next release have a direct interface to ChemAxon's JChem for Excel. You can then use JChem's advanced chemical property calculators on peptides. Wed, 05 May 2010 12:30 +0100 http://www.biochemfusion.com/downloads/ Releases Proteax for Spreadsheets can now interface to even more chemistry tools and databases through SD file export capability. Condensed Live Preview allows you to more easily get an overview of large protein structures. Plus support for Office 2010 and more. Mon, 05 Apr 2010 23:45 +0100 http://www.proteax.dk/proteax_live/license.py/request_trial Updates You can now generate your own Proteax trial license by entering your e-mail address in a simple web form. The license generation is fully automatic and ensures that you will receive your license via e-mail within minutes. Sun, 21 Mar 2010 22:30 +0100 http://www.proteax.dk/proteax_live/webapi.py/help Updates Proteax now has a Web API that can be used to enhance web solutions with Proteax functionality in a simple way. Wed, 10 Feb 2010 18:00 +0100 http://www.biochemfusion.com/ Updates Proteax for Spreadsheets is now officially supported on Windows terminal servers. Licensed end-users may request installation instructions by contacting support. Wed, 20 Jan 2010 12:00 +0100 http://www.biochemfusion.com/downloads/ Releases Proteax for Spreadsheets now comes with built-in protein visualization and protein derivatives naming. You can download a free trial version that will work until March 1st. Mon, 11 Jan 2010 20:00 +0100 http://www.biochemfusion.com/doc/ Releases Biochemfusion has now published the protein Derivatives Notation specification. The notation defines computer-readable text that resembles IUPAC naming of protein derivatives. Fri, 23 Oct 2009 20:00 +0100 http://www.biochemfusion.com/doc/ Updates The Biochemfusion Protein Line Notation specification has been updated to version 1.1. Changes includes support for di-selenium bridges and text containing multiple PLN entries. Wed, 14 Oct 2009 20:00 +0100 http://www.biochemfusion.com/ News Biochemfusion is exhibiting at BioConference Live November 17-19. Registration for this online conference is free. Fri, 9 Oct 2009 12:00 +0100