Biochemfusion docs

Biochemfusion documents and presentations

Creating readable protein SAR tables through consistent naming
Biochemfusion's DerNot notation defines a convenient protein naming scheme that is both human- and machine-readable. Together with Biochemfusion's Protein Line Notation you have the tools to create readable protein SAR tables with consistent and chemically precise names.

Informatics UGM at MipTec 2011, Basel, Switzerland
When protein variants are listed in SAR tables their full sequences or full structures contain too much detail to be of much practical use. By using Biochemfusion's Proteax software to generate consistent protein names you can however generate readable SAR tables. This presentation presents an actual database system that generates protein SAR tables via calculated protein names. The system even retains the underlying chemistry so modified proteins can be found via standard molecular queries.

ICM 2011 in Beijing, China
A prevailing industry trend is to put less emphasis on traditional small-molecule medicinal chemistry and start designing drugs based on peptides and proteins. However, current life science IT systems are usually not prepared to handle these larger molecules. This presentation discusses how peptides and proteins can be efficiently represented in a way that is compatible with both small-molecule systems and normal bioinformatics tools.

Partner presentation at the ChemAxon European UGM 2011
The "Marvin and JChem + Proteax" presentation shows how vendors are using Proteax together with the ChemAxon toolkits to provide unique solutions.

Partner presentation at the ChemAxon European UGM 2010
The "Interfacing to JChem for Excel" presentation demonstrates how you can manipulate peptides in Excel with Proteax for Spreadsheets and transfer them directly to ChemAxon's JChem for Excel to calculate pI values.

Older versions

OpenOffice.org Calc Add-in How-To. Describes how to build a spreadsheet add-in for OpenOffice.org Calc. Python-based simple example.